Stem-loop rno-mir-1843a

Accession

MI0021535

Description

Rattus norvegicus rno-mir-1843a precursor miRNA

Gene family

MIPF0001119; mir-1843

Literature search

5 open access papers mention rno-mir-1843a
(14 sentences)

Sequence

128969 reads, 174 reads per million, 497 experiments

agcgguccuacaugaaUAUGGAGGUCUCUGUCUGACUuagaauaguuggcuaagUCUGAUCGUUCACCUCCAUACAacuuuuagacuguc
.((((((.........(((((((((..(.(((.(((((((.........))))))).))).)...))))))))).........)))))).

Structure

a      cuacaugaa         -CU U   U       aau 
 gcgguc         UAUGGAGGU   C GUC GACUuag   a
 ||||||         |||||||||   | ||| |||||||   g
 ugucag         AUACCUCCA   G UAG CUgaauc   u
c      auuuucaAC         CUU C   U       ggu 

Annotation confidence High

Genome context

chr6: 103567572-103567661 [-]

Mature rno-miR-1843a-5p

• Accession: MIMAT0024847
• Description: Rattus norvegicus rno-miR-1843a-5p mature miRNA
• Sequence: 17 - UAUGGAGGUCUCUGUCUGACU - 37
• Evidence: experimental ; Illumina [1-2]

Mature rno-miR-1843a-3p

• Accession: MIMAT0024848
• Description: Rattus norvegicus rno-miR-1843a-3p mature miRNA
• Sequence: 55 - UCUGAUCGUUCACCUCCAUACA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22470567
   Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation
   Meng F, Hackenberg M, Li Z, Yan J, Chen T
   PLoS One (2012) 7:e34394


2. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


3. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324