Stem-loop ppe-MIR6259

Accession

MI0021612

Description

Prunus persica ppe-MIR6259 precursor miRNA

Sequence

aaaguuuucuuuuuaucgcccauauuuuucuagacguccaucuuaacaguuucuuuuuguucuuuuauagcguguaaacugcuaaaauggagguuUAGAAAAAUACGGGCGAUAAAugaaaacucu
..(((((((..((((((((((.(((((((((((((.(((((.(((.(((((((...((((......))))...).)))))).))).))))).))))))))))))).)))))))))).)))))))..

Structure

aa       uu          a             g     c   a      - uuu    uc 
  aguuuuc  uuuaucgccc uauuuuucuagac uccau uua caguuu c   uugu  u
  |||||||  |||||||||| ||||||||||||| ||||| ||| |||||| |   ||||   
  ucaaaag  AAAUAGCGGG AUAAAAAGAUuug aggua aau gucaaa g   gaua  u
uc       -u          C             g     a   c      u ugc    uu 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 38380122-38380247 [+]

Mature ppe-miR6259

• Accession: MIMAT0027275
• Description: Prunus persica ppe-miR6259 mature miRNA
• Sequence: 96 - UAGAAAAAUACGGGCGAUAAA - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371