Stem-loop ppe-MIR6270

Accession

MI0021632

Description

Prunus persica ppe-MIR6270 precursor miRNA

Sequence

ucugaggucaaauuggaaaaagaaauuccaauaccugaaucaaugaacaucuagaaaaccccaacuaucccugcuacaaaauuccuagcugugagguugguaccacuggauuuucaaguacaugucuucagugaauuggguuucugcaagaacaagaaaauccauuuaugggucacaaccauugaguagcuagaggccuauaaaaucaacaucugauauugguacgaauaagcuacgucggugcgugcauuuaauaucuagugggucaaggucauacaugauuuagagaaaacaucauuagagaauacauauuuggaaacucuggaugcucaccgaUUCUGGUAUUGGAAUUUCAUUuucugauuugaauccagaug
((((.(((((((((((((((.((((((((((((((.(((((..(((.((((((((...((((((((.((.(.((((.........)))).).))))))))..(((((((((.((.((((.(((((.....((((((.((((((((.........)).)))))))))))).(((....)))(((((((((((....(((.(((...(((.....)))))).))).......)))))).)))))))))).)))))).))))))))).((.((((((....)))))).))...........................))....)))))))).)))..))))).)))))))))))))).)))))))))))).)))))))..

Structure

--    a   -            a              u     aa   a        -aaa  --------ccaacuaucccugcuacaaaauuccuagcugugagguuggua         u  c    a     cuucagugaauuggguuucugcaagaacaagaaaauccauuuaugggucacaacc     -      ---agag   u   aaa   a 
  ucug ggu caaauuggaaaa gaaauuccaauacc gaauc  uga caucuaga    cc                                                  ccacuggau uu aagu caugu                                                       auuga guagcu       gcc aua   uca c
  |||| ||| |||||||||||| |||||||||||||| |||||  ||| ||||||||    ||                                                  ||||||||| || |||| |||||                                                       ||||| ||||||       ||| |||   ||| a
  agac cua guuuagucuuUU CUUUAAGGUUAUGG CUUag  acu guaggucu    gg                                                  ggugaucua aa uuua gugcg                                                       uggcu caucga       ugg uau   agu u
gu    -   a            A              U     cc   c        caaa  uuuauacauaagagauuacuacaaaagagauuuaguacauacuggaacug         u  -    c     -------------------------------------------------------     g      auaagca   u   ---   c 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 25420161-25420537 [+]

Mature ppe-miR6270

• Accession: MIMAT0027295
• Description: Prunus persica ppe-miR6270 mature miRNA
• Sequence: 337 - UUCUGGUAUUGGAAUUUCAUU - 357
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371