Stem-loop ppe-MIR6274a

Accession

MI0021638

Description

Prunus persica ppe-MIR6274a precursor miRNA

Gene family

MIPF0001706; MIR6274

Sequence

gagauaguauUAUUUUGCUAUCUUCGGGCAAUAacacaauaauauguaaaaaaauuaucuuauaugucauugcguuauugaucgaaaauagcaaaaaguuauauauucccguugcaugagaauuucucu
((((((..(((.(((((((((.((((..(((((((.((((.((((((((..........)))))))).)))).)))))))..)))).))))))))))))..))).))).........((((...)))).

Structure

---------------------   -   gu   A         C    GG       a    a        aaaa 
                     gag aua  auU UUUUGCUAU UUCG  CAAUAac caau auauguaa    a
                     ||| |||  ||| ||||||||| ||||  ||||||| |||| ||||||||     
                     cuu uau  uga aaaacgaua aagc  guuauug guua uguauauu    u
ucucuuuaagaguacguugcc   a   au   -         a    ua       c    c        cuau 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG5: 3414958-3415086 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR6274a

Mature ppe-miR6274a

• Accession: MIMAT0027301
• Description: Prunus persica ppe-miR6274a mature miRNA
• Sequence: 11 - UAUUUUGCUAUCUUCGGGCAAUA - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371