Stem-loop ppe-MIR6297b

Accession

MI0021673

Description

Prunus persica ppe-MIR6297b precursor miRNA

Gene family

MIPF0001754; MIR6297

Sequence

gcgcaaagucacuuugagcgacgaauuauuuuucgucgcgcaaaauuggucgcgcaagacuuugagcgacGAUGUAUUGUCGUCGCGCAAAGUgauuuugcac
..((((((((((((((.(((((((........(((((((.(((....((((......))))))).))))))).......))))))).))))))))))))))..

Structure

gc              a       auuauuuu       g   aauu    gc 
  gcaaagucacuuug gcgacga        ucgucgc caa    gguc  g
  |||||||||||||| |||||||        ||||||| |||    ||||   
  cguuuuagUGAAAC CGCUGCU        AGcagcg guu    ucag  c
ca              G       -GUUAUGU       a   ----    aa 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG8: 2802745-2802847 [-]

Mature ppe-miR6297b

• Accession: MIMAT0027336
• Description: Prunus persica ppe-miR6297b mature miRNA
• Sequence: 71 - GAUGUAUUGUCGUCGCGCAAAGU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371