Stem-loop sequence gma-MIR156z

Accession

MI0021679 (change log)

Description

Glycine max miR156z stem-loop

Gene family

MIPF0000010; MIR159

Literature search

40 open access papers mention gma-MIR156z
(162 sentences)

Stem-loop

   uaaac  a    -         ag                  agugau     a     g  g    -      guu    u  gu       aag 
5'      cc aguu ggagcucuc  cacuccaguguugaagga      gguaa cccua cu cuaa uucaug   accu ug  uucacau   g
        || |||| |||||||||  ||||||||||||||||||      ||||| ||||| || |||| ||||||   |||| ||  |||||||    
3'      gg uuaa ccucgaggg  gugagguuaugauuuucu      ccguu ggggu ga gguu aaguac   uggg ac  aagugua   a
   -uucc  a    u         aa                  --aguu     -     a  -    c      guc    u  ug       cga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr7: 5432656-5432842 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR156z

• gma-MIR156z: chr7: 5432656-5432842 [-]
• gma-MIR159b: chr7: 5424789-5424974 [-]

Database links

• miRBase Tracker:MI0021679

Mature sequence gma-miR156z

• Accession: MIMAT0024885
• Sequence: 156 - auuggagugaagggagcu - 173
• Evidence: experimental; Illumina [1]

References

1. PMID:22559273 "Genome organization and characteristics of soybean microRNAs" Turner M, Yu O, Subramanian S BMC Genomics. 13:169(2012).