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Genome organization and characteristics of soybean microRNAs |
|
|---|---|
| PubMed ID | 22559273 |
| Authors | Turner M, Yu O, Subramanian S |
| Journal | BMC Genomics |
| Volume | 13 |
| Pages | 169 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| gma-MIR156u | MI0021674 | None | chr2 | 38792955 | 38793054 | + | - |
| gma-MIR156v | MI0021675 | None | chr4 | 4306348 | 4306451 | + | - |
| gma-MIR156w | MI0021676 | None | chr6 | 4047089 | 4047194 | + | - |
| gma-MIR156x | MI0021677 | None | chr14 | 9223981 | 9224092 | + | - |
| gma-MIR156y | MI0021678 | None | chr17 | 38139717 | 38139822 | - | - |
| gma-MIR156z | MI0021679 | None | chr7 | 5432656 | 5432842 | - | - |
| gma-MIR156aa | MI0021680 | None | chr16 | 2833375 | 2833561 | - | - |
| gma-MIR156ab | MI0021681 | None | chr7 | 5415191 | 5415378 | + | - |
| gma-MIR160f | MI0021682 | None | chr10 | 4750208 | 4750304 | - | - |
| gma-MIR164e | MI0021683 | None | chr2 | 1535426 | 1535520 | + | - |
| gma-MIR164f | MI0021684 | None | chr3 | 43533079 | 43533181 | + | - |
| gma-MIR164g | MI0021685 | None | chr3 | 44895293 | 44895384 | + | - |
| gma-MIR164h | MI0021686 | None | chr9 | 49456787 | 49456944 | - | - |
| gma-MIR164i | MI0021687 | None | chr18 | 49506475 | 49506631 | + | - |
| gma-MIR164j | MI0021688 | None | chr19 | 48278744 | 48278831 | + | - |
| gma-MIR164k | MI0021689 | None | chr20 | 46912450 | 46912558 | - | - |
| gma-MIR166n | MI0021690 | None | chr5 | 38037266 | 38037408 | - | - |
| gma-MIR166o | MI0021691 | None | chr6 | 13019417 | 13019561 | - | - |
| gma-MIR166p | MI0021692 | None | chr3 | 37501582 | 37501703 | - | - |
| gma-MIR166q | MI0021693 | None | chr4 | 47978878 | 47979029 | + | - |
| gma-MIR166r | MI0021694 | None | KQ474607.1 | 1988 | 2142 | - | - |
| gma-MIR166s | MI0021695 | None | chr7 | 10246809 | 10246932 | + | - |
| gma-MIR166t | MI0021696 | None | chr9 | 39698809 | 39698944 | - | - |
| gma-MIR166u | MI0021697 | None | chr4 | 33862799 | 33862939 | + | - |
| gma-MIR169v | MI0021699 | None | chr13 | 15982021 | 15982322 | - | - |
| gma-MIR390d | MI0021700 | None | chr2 | 41878692 | 41878788 | + | - |
| gma-MIR390e | MI0021701 | None | chr18 | 49001211 | 49001337 | + | - |
| gma-MIR390f | MI0021702 | None | chr11 | 15535991 | 15536093 | - | - |
| gma-MIR390g | MI0021703 | None | chr18 | 5065776 | 5065877 | - | - |
| gma-MIR393c | MI0021704 | None | chr2 | 44047954 | 44048066 | - | - |
| gma-MIR393d | MI0021705 | None | chr10 | 25990586 | 25990708 | - | - |
| gma-MIR393e | MI0021706 | None | chr14 | 5137829 | 5137969 | + | - |
| gma-MIR393f | MI0021707 | None | chr18 | 2419300 | 2419417 | - | - |
| gma-MIR393g | MI0021708 | None | chr20 | 26105756 | 26105874 | - | - |
| gma-MIR393h | MI0021709 | None | chr9 | 34250214 | 34250360 | + | - |
| gma-MIR393i | MI0021710 | None | chr10 | 46430313 | 46430450 | + | - |
| gma-MIR393j | MI0021711 | None | chr16 | 34388224 | 34388377 | + | - |
| gma-MIR393k | MI0021712 | None | chr20 | 39779945 | 39780086 | - | - |
| gma-MIR394g | MI0021713 | None | chr6 | 1520278 | 1520357 | - | - |
| gma-MIR395h | MI0021714 | None | chr1 | 4814429 | 4814541 | - | - |
| gma-MIR395i | MI0021715 | None | chr1 | 4819957 | 4820072 | - | - |
| gma-MIR395j | MI0021716 | None | chr1 | 4832871 | 4832996 | - | - |
| gma-MIR395k | MI0021717 | None | chr1 | 4835314 | 4835439 | - | - |
| gma-MIR395l | MI0021718 | None | chr2 | 1760207 | 1760340 | + | - |
| gma-MIR395m | MI0021719 | None | chr2 | 1774462 | 1774561 | + | - |
| gma-MIR1515b | MI0021720 | None | chr11 | 6656792 | 6656932 | - | - |
| gma-MIR1516d | MI0021721 | None | chr8 | 46223096 | 46223202 | - | - |
| gma-MIR6299 | MI0021723 | None | chr6 | 12107873 | 12107969 | + | - |
| gma-MIR6300 | MI0021724 | None | chr8 | 3181460 | 3181710 | - | - |
| gma-MIR156d | MI0001770 | None | chr8 | 3896578 | 3896728 | + | - |
| gma-MIR156e | MI0001771 | None | chr18 | 57144436 | 57144559 | - | - |
| gma-MIR156c | MI0001772 | None | chr16 | 5359989 | 5360173 | - | - |
| gma-MIR159a | MI0001773 | None | chr9 | 40266722 | 40266935 | + | - |
| gma-MIR160a | MI0001774 | None | chr10 | 44431708 | 44431826 | - | - |
| gma-MIR166a | MI0001775 | None | chr16 | 1934911 | 1935056 | - | - |
| gma-MIR166b | MI0001776 | None | chr8 | 282785 | 282951 | - | - |
| gma-MIR167a | MI0001777 | None | chr19 | 42073549 | 42073667 | + | - |
| gma-MIR167b | MI0001778 | None | chr2 | 14838068 | 14838188 | - | - |
| gma-MIR156a | MI0001784 | None | chr17 | 5885507 | 5885628 | - | - |
| gma-MIR156b | MI0001790 | None | chr14 | 992155 | 992274 | + | - |
| gma-MIR169a | MI0001791 | None | chr9 | 38336014 | 38336134 | + | - |
| gma-MIR159b | MI0007206 | None | chr7 | 5424789 | 5424974 | - | - |
| gma-MIR159c | MI0007207 | None | chr16 | 2830034 | 2830218 | - | - |
| gma-MIR164a | MI0007209 | None | chr19 | 49681250 | 49681344 | + | - |
| gma-MIR167c | MI0007210 | None | chr7 | 39734580 | 39734954 | + | - |
| gma-MIR169b | MI0007211 | None | chr2 | 10504688 | 10504870 | + | - |
| gma-MIR169c | MI0007212 | None | chr9 | 5343659 | 5343773 | + | - |
| gma-MIR390a | MI0007214 | None | chr3 | 6398854 | 6398958 | - | - |
| gma-MIR390b | MI0007215 | None | chr14 | 46392430 | 46392532 | + | - |
| gma-MIR393a | MI0007216 | None | chr11 | 32101395 | 32101514 | + | - |
| gma-MIR1508a | MI0007220 | None | chr16 | 33378856 | 33378950 | + | - |
| gma-MIR1510a | MI0007222 | None | chr16 | 31887382 | 31887474 | + | - |
| gma-MIR1515a | MI0007228 | None | chr1 | 49411416 | 49411560 | + | - |
| gma-MIR167d | MI0010571 | None | chr10 | 2648276 | 2648396 | + | - |
| gma-MIR1508b | MI0010574 | None | None | None | - | ||
| gma-MIR1510b | MI0010575 | None | chr2 | 6675723 | 6675816 | + | - |
| gma-MIR2109 | MI0010579 | None | chr4 | 36995886 | 36995956 | - | - |
| gma-MIR167e | MI0010725 | None | chr20 | 39002092 | 39002200 | + | - |
| gma-MIR167f | MI0010726 | None | chr10 | 47144841 | 47144949 | - | - |
| gma-MIR167g | MI0016548 | None | chr10 | 39602156 | 39602233 | + | - |
| gma-MIR156f | MI0016559 | None | chr2 | 47699715 | 47699820 | - | - |
| gma-MIR169d | MI0016571 | None | chr15 | 14186946 | 14187033 | + | - |
| gma-MIR169e | MI0016576 | None | chr15 | 14210033 | 14210152 | + | - |
| gma-MIR4412 | MI0016578 | None | chr4 | 37037465 | 37037552 | - | - |
| gma-MIR4413a | MI0016579 | None | chr19 | 1832822 | 1832908 | + | - |
| gma-MIR156g | MI0016580 | None | chr19 | 8868796 | 8868913 | - | - |
| gma-MIR159d | MI0016581 | None | None | None | - | ||
| gma-MIR4416a | MI0016585 | None | chr19 | 40891340 | 40891469 | - | - |
| gma-MIR156h | MI0017819 | None | chr4 | 5047205 | 5047294 | - | - |
| gma-MIR156i | MI0017820 | None | chr5 | 41728607 | 41728736 | + | - |
| gma-MIR160b | MI0017821 | None | chr20 | 41668766 | 41668855 | + | - |
| gma-MIR160c | MI0017822 | None | chr19 | 43999110 | 43999200 | - | - |
| gma-MIR160d | MI0017823 | None | chr13 | 25235556 | 25235646 | - | - |
| gma-MIR160e | MI0017824 | None | chr3 | 39255811 | 39255900 | - | - |
| gma-MIR164b | MI0017826 | None | chr10 | 1558481 | 1558570 | + | - |
| gma-MIR164c | MI0017827 | None | chr3 | 5194846 | 5194935 | - | - |
| gma-MIR164d | MI0017828 | None | chr10 | 38618021 | 38618110 | + | - |
| gma-MIR166c | MI0017829 | None | chr7 | 4502830 | 4502959 | - | - |
| gma-MIR166d | MI0017830 | None | chr20 | 44227240 | 44227349 | - | - |
| gma-MIR166e | MI0017831 | None | chr4 | 47978621 | 47978730 | + | - |
| gma-MIR166f | MI0017832 | None | chr10 | 41798829 | 41798938 | + | - |
| gma-MIR166g | MI0017833 | None | chr10 | 2913323 | 2913432 | - | - |
| gma-MIR166h | MI0017834 | None | chr8 | 14920990 | 14921179 | + | - |
| gma-MIR169f | MI0017836 | None | chr10 | 40892477 | 40892646 | - | - |
| gma-MIR169g | MI0017837 | None | chr17 | 4591798 | 4591927 | - | - |
| gma-MIR390c | MI0017845 | None | chr1 | 43181160 | 43181249 | + | - |
| gma-MIR2118a | MI0017849 | None | chr20 | 36443544 | 36443713 | + | - |
| gma-MIR2118b | MI0017850 | None | chr10 | 49169712 | 49169821 | - | - |
| gma-MIR1508c | MI0017855 | None | chr9 | 31140427 | 31140516 | + | - |
| gma-MIR169h | MI0017912 | None | chr9 | 5330689 | 5330839 | + | - |
| gma-MIR167h | MI0017914 | None | chr10 | 47144854 | 47144942 | + | - |
| gma-MIR169i | MI0017918 | None | chr13 | 21505359 | 21505509 | + | - |
| gma-MIR167i | MI0017926 | None | chr20 | 39002038 | 39002188 | - | - |
| gma-MIR395a | MI0018642 | None | chr1 | 4840520 | 4840629 | + | - |
| gma-MIR395b | MI0018643 | None | chr2 | 1747330 | 1747424 | - | - |
| gma-MIR395c | MI0018644 | None | chr8 | 41475132 | 41475218 | + | - |
| gma-MIR156j | MI0018651 | None | chr2 | 7901956 | 7902058 | + | - |
| gma-MIR156k | MI0018652 | None | chr6 | 4705086 | 4705177 | - | - |
| gma-MIR156l | MI0018653 | None | chr7 | 9384146 | 9384266 | + | - |
| gma-MIR156m | MI0018654 | None | chr9 | 40437756 | 40437870 | - | - |
| gma-MIR156n | MI0018655 | None | chr14 | 10456738 | 10456826 | - | - |
| gma-MIR156o | MI0018656 | None | chr17 | 37469976 | 37470065 | + | - |
| gma-MIR159e | MI0018657 | None | chr7 | 9561934 | 9562144 | - | - |
| gma-MIR159f | MI0018658 | None | chr16 | 2819636 | 2819815 | - | - |
| gma-MIR166i | MI0018660 | None | chr2 | 14544488 | 14544584 | + | - |
| gma-MIR166j | MI0018661 | None | chr15 | 3706979 | 3707146 | - | - |
| gma-MIR169j | MI0018662 | None | chr2 | 43801693 | 43801777 | - | - |
| gma-MIR169k | MI0018663 | None | chr9 | 5312564 | 5312668 | + | - |
| gma-MIR169l | MI0018664 | None | chr14 | 5435482 | 5435595 | + | - |
| gma-MIR169m | MI0018665 | None | chr13 | 21492366 | 21492488 | + | - |
| gma-MIR169n | MI0018666 | None | chr15 | 14166062 | 14166176 | + | - |
| gma-MIR4413b | MI0018684 | None | chr13 | 16661157 | 16661224 | - | - |
| gma-MIR167j | MI0018686 | None | chr20 | 45890458 | 45890535 | + | - |
| gma-MIR393b | MI0019715 | None | chr1 | 42280842 | 42280957 | - | - |
| gma-MIR4416b | MI0019722 | None | chr3 | 36067834 | 36067977 | - | - |
| gma-MIR828a | MI0019740 | None | chr11 | 9052348 | 9052460 | + | - |
| gma-MIR156p | MI0019741 | None | chr11 | 462200 | 462299 | - | - |
| gma-MIR828b | MI0019743 | None | chr12 | 3219162 | 3219271 | + | - |
| gma-MIR156q | MI0019748 | None | chr13 | 22074983 | 22075087 | + | - |
| gma-MIR169o | MI0019751 | None | chr13 | 21496986 | 21497084 | + | - |
| gma-MIR169p | MI0019756 | None | chr15 | 14192081 | 14192178 | + | - |
| gma-MIR156r | MI0019757 | None | chr16 | 6633951 | 6634116 | + | - |
| gma-MIR156s | MI0019761 | None | chr17 | 4021217 | 4021350 | - | - |
| gma-MIR169r | MI0019762 | None | chr17 | 4587059 | 4587161 | - | - |
| gma-MIR169s | MI0019763 | None | chr17 | 4594138 | 4594257 | - | - |
| gma-MIR166k | MI0019768 | None | chr19 | 36827774 | 36827945 | - | - |
| gma-MIR156t | MI0019770 | None | chr1 | 56198440 | 56198539 | + | - |
| gma-MIR169t | MI0019778 | None | chr5 | 38544108 | 38544233 | + | - |
| gma-MIR166l | MI0019780 | None | chr6 | 45680685 | 45680863 | - | - |
| gma-MIR395d | MI0019788 | None | chr8 | 41415505 | 41415625 | - | - |
| gma-MIR395e | MI0019789 | None | chr8 | 41424558 | 41424674 | - | - |
| gma-MIR395f | MI0019790 | None | chr8 | 41439069 | 41439190 | - | - |
| gma-MIR395g | MI0019791 | None | chr8 | 41445444 | 41445571 | - | - |
| gma-MIR166m | MI0019792 | None | chr9 | 36469526 | 36469701 | + | - |
| gma-MIR169u | MI0019794 | None | chr9 | 45847295 | 45847435 | - | - |
| gma-MIR167k | MI0031050 | None | chr2 | 307525 | 307604 | - | - |
| gma-MIR167l | MI0033446 | None | chr3 | 37301792 | 37301901 | + | - |
| gma-MIR169w | MI0033468 | None | chr9 | 5348169 | 5348283 | + | - |