Stem-loop gma-MIR393b

Accession

MI0019715

Description

Glycine max gma-MIR393b precursor miRNA

Literature search

21 open access papers mention gma-MIR393b
(51 sentences)

Sequence

14486 reads, 58.0 reads per million, 177 experiments

agaggaggcaUCCAAAGGGAUCACAUUGAUCccaaauccaagcuucaauguucuucucucuuucucacucaaaauauuaauuuuauuuggGAUCAUGCUAUCCCUUUGGAcuucuc
.((((((...(((((((((((..(((.((((((((((..(((.((.((((((....................)))))))).))))))))))))))))..)))))))))))))))))

Structure

a      gca           CA   U          cc   c  c      cuucucucu 
 gaggag   UCCAAAGGGAU  CAU GAUCccaaau  aag uu aauguu         u
 ||||||   |||||||||||  ||| ||||||||||  ||| || ||||||          
 cucuuc   AGGUUUCCCUA  GUA CUAGgguuua  uuu aa uuauaa         u
-      ---           UC   -          --   u  -      aacucacuc 

Annotation confidence High

Genome context

chr1: 42280842-42280957 [-]

Mature gma-miR393b-5p

• Accession: MIMAT0054291
• Description: Glycine max gma-miR393b-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCACAUUGAUC - 31
• Evidence: experimental ; unknown

Mature gma-miR393b-3p

• Accession: MIMAT0023170
• Description: Glycine max gma-miR393b-3p mature miRNA
• Sequence: 91 - GAUCAUGCUAUCCCUUUGGA - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553