Stem-loop gma-MIR167h

Accession

MI0017914

Description

Glycine max gma-MIR167h precursor miRNA

Literature search

27 open access papers mention gma-MIR167h
(196 sentences)

Sequence

485578 reads, 1549.0 reads per million, 123 experiments

aacuacuaGGUGAAACUGCCACAUGAUCUGAUcuuuccacagcaagugagggaaguuAAGAUCAUGCUGGCAGCUUCAacugguagugg
.((((((((.((((.((((((((((((((...((((((.((.....)).))))))...)))))))).)))))).)))).))))))))..

Structure

-a        G    A      -        GAU      a  g 
  acuacuaG UGAA CUGCCA CAUGAUCU   cuuucc ca c
  |||||||| |||| |||||| ||||||||   |||||| || a
  ugaugguc ACUU GACGGU GUACUAGA   gaaggg gu a
gg        a    C      C        Auu      a  g 

Annotation confidence Low

Genome context

chr10: 47144854-47144942 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR167h

Mature gma-miR167h-5p

• Accession: MIMAT0054211
• Description: Glycine max gma-miR167h-5p mature miRNA
• Sequence: 9 - GGUGAAACUGCCACAUGAUCUGAU - 32
• Evidence: experimental ; unknown

Mature gma-miR167h-3p

• Accession: MIMAT0021064
• Description: Glycine max gma-miR167h-3p mature miRNA
• Sequence: 58 - AAGAUCAUGCUGGCAGCUUCA - 78
• Evidence: experimental ; 454 [1], SOLiD [2]

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


2. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972