Stem-loop gma-MIR159f

Accession

MI0018658

Description

Glycine max gma-MIR159f precursor miRNA

Literature search

23 open access papers mention gma-MIR159f
(78 sentences)

Sequence

acccaaguugGAGUUCCCUGCACUCCAAGUCugaaaggauaugaugguaaaccucugcugcuaguucauggauaccucuggccucguaacaacaugcguucgaagucaaggguuugcaugaccugggagaugaguuuaccuugaccuuuugguAUUGGAGUGAAGGGAGCUCCAgagggu
((((...((((((((((((.((((((((..((((((((...(((.(((((((.((..((.((((.(((((.(.((((.((((.(((.(((.......)))))).)))).)))).).))))).)))).))..)))))))))))).))))))))..)))))))).)))))))))))).))))

Structure

    aag            G        GU        aua   u       c  ug  g    u     g u    c    c   u   aa 
accc   uugGAGUUCCCU CACUCCAA  Cugaaagg   uga gguaaac uc  cu cuag ucaug a accu uggc ucg aac  c
||||   |||||||||||| ||||||||  ||||||||   ||| ||||||| ||  || |||| ||||| | |||| |||| ||| |||  a
uggg   gACCUCGAGGGA GUGAGGUU  gguuuucc   guu ccauuug ag  ga gguc aguac u uggg acug agc uug  u
    --a            A        Au        --a   -       -  ua  g    c     g u    a    a   -   cg 

Annotation confidence Not enough data

Genome context

chr16: 2819636-2819815 [-]

Mature gma-miR159f-5p

• Accession: MIMAT0021642
• Description: Glycine max gma-miR159f-5p mature miRNA
• Sequence: 11 - GAGUUCCCUGCACUCCAAGUC - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR159f-3p

• Accession: MIMAT0021643
• Description: Glycine max gma-miR159f-3p mature miRNA
• Sequence: 154 - AUUGGAGUGAAGGGAGCUCCA - 174
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307