Stem-loop gma-MIR166q

Accession

MI0021693

Description

Glycine max gma-MIR166q precursor miRNA

Literature search

36 open access papers mention gma-MIR166q
(207 sentences)

Sequence

415546716 reads, 506378.0 reads per million, 178 experiments

uguuagguugagaGGAAUGUUGUCUGGCUCGAGGUCaugaagauauacauaugaaaguguuaacuuuucaguuaauuucuaggauaaauuaauggaaauuaauuuauacccuaaaugauucUCGGACCAGGCUUCAUUCCCCccagccaaca
((((.(((((.(.((((((..((((((.((((((((((..((.............((.(((((((....)))))))..)).((((((((((((....)))))))))).))))..)))).)))))).))))))..)))))).).)))))))))

Structure

    a     a a      UU      C      -    ga  auauacauaugaaaguguuaacuuuucaguuaauuucua  -          g 
uguu gguug g GGAAUG  GUCUGG UCGAGG UCau  ag                                       gg auaaauuaau g
|||| ||||| | ||||||  |||||| |||||| ||||  ||                                       || ||||||||||  
acaa ccgac C CCUUAC  CGGACC GGCUcu agua  uc                                       cc uauuuaauua a
    -     c C      UU      A      u    aa  ---------------------------------------  a          a 

Annotation confidence High

Genome context

chr4: 47978878-47979029 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR166q

Mature gma-miR166q-5p

• Accession: MIMAT0054381
• Description: Glycine max gma-miR166q-5p mature miRNA
• Sequence: 14 - GGAAUGUUGUCUGGCUCGAGGUC - 36
• Evidence: experimental ; unknown

Mature gma-miR166q-3p

• Accession: MIMAT0024899
• Description: Glycine max gma-miR166q-3p mature miRNA
• Sequence: 122 - UCGGACCAGGCUUCAUUCCCC - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169