Stem-loop gma-MIR390d

Accession

MI0021700

Description

Glycine max gma-MIR390d precursor miRNA

Literature search

19 open access papers mention gma-MIR390d
(71 sentences)

Sequence

468210 reads, 724.0 reads per million, 170 experiments

gagaaucuguaAAGCUCAGGAGGGAUAGCACCaugauacugaugauguucauagcaguacaaacuuggCGCUAUCUAUCUUGAGCUUCAuggcuucu
.((((.((((.((((((((((.(((((((.(((((.(((((((((...))))..)))))))....))).))))))).)))))))))).)))).))))

Structure

g    u    a          G       A   ----  a     --    u 
 agaa cugu AAGCUCAGGA GGAUAGC CCa    ug uacug  auga  
 |||| |||| |||||||||| ||||||| |||    || |||||  |||| g
 ucuu gguA UUCGAGUUCU UCUAUCG ggu    ac augac  uacu  
-    c    C          A       C   ucaa  -     ga    u 

Annotation confidence High

Genome context

chr2: 41878692-41878788 [+]

Mature gma-miR390d-5p

• Accession: MIMAT0024906
• Description: Glycine max gma-miR390d-5p mature miRNA
• Sequence: 12 - AAGCUCAGGAGGGAUAGCACC - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR390d-3p

• Accession: MIMAT0054387
• Description: Glycine max gma-miR390d-3p mature miRNA
• Sequence: 69 - CGCUAUCUAUCUUGAGCUUCA - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169