Stem-loop gma-MIR169b

Accession

MI0007211

Description

Glycine max gma-MIR169b precursor miRNA

Literature search

24 open access papers mention gma-MIR169b
(98 sentences)

Sequence

126946 reads, 752.0 reads per million, 178 experiments

uaugaugcugCAGCCAAGGAUGACUUGCCGAuaaauucuuucucuaauuugacuuucaauucauguuugucaauugauagugcauuaguucuaauauaugcauuugauuauauagaacacuauugugaaagugucuuuagggauaggguaaauuCGGCAAGUCAUCUUUGGCUACaugucuau
...((((.((.((((((((((((((((((((...(((((.(((((((....(((((((....(((((((((....))))).))))..((((((.((((..(....)..)))))))))).......)))))))....))))))).)))))....)))))))))))))))))))).))))))...

Structure

uau    c  C                    -uaa     u       uuug       auucauguuugucaauugauagugcauua      a    ug a 
   gaug ug AGCCAAGGAUGACUUGCCGA    auucu ucucuaa    acuuuca                             guucua uaua  c u
   |||| || ||||||||||||||||||||    ||||| |||||||    |||||||                             |||||| ||||  |  
   cugu aC UCGGUUUCUACUGAACGGCu    uggga agggauu    ugaaagu                             caagau auau  g u
uau    -  A                    uaaa     u       ucug       ----------------------guuauca      -    ua u 

Annotation confidence High

Genome context

chr2: 10504688-10504870 [+]

Mature gma-miR169b-5p

• Accession: MIMAT0007356
• Description: Glycine max gma-miR169b-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: experimental ; 454 [1]

Mature gma-miR169b-3p

• Accession: MIMAT0054020
• Description: Glycine max gma-miR169b-3p mature miRNA
• Sequence: 155 - CGGCAAGUCAUCUUUGGCUAC - 175
• Evidence: experimental ; unknown

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160