Stem-loop gma-MIR160c

Accession

MI0017822

Description

Glycine max gma-MIR160c precursor miRNA

Literature search

22 open access papers mention gma-MIR160c
(61 sentences)

Sequence

449211 reads, 816.0 reads per million, 177 experiments

UGCCUGGCUCCCUGUAUGCCauuugcagagcccaucaggacagugauggccuuaacgaauggCGUGCGAGGAGCCAUGCAUGuugugcguu
(((.(((((((.(((((((((((((..(((.((((((......)))))).)))..))))))))))))).))))))).)))...........

Structure

-----------   C       C             ca   c      gg 
           UGC UGGCUCC UGUAUGCCauuug  gag ccauca  a
           ||| ||||||| |||||||||||||  ||| ||||||   
           ACG ACCGAGG GCGUGCgguaagc  uuc gguagu  c
uugcguguuGU   U       A             aa   c      ga 

Annotation confidence High

Genome context

chr19: 43999110-43999200 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR160c

Mature gma-miR160c-5p

• Accession: MIMAT0020971
• Description: Glycine max gma-miR160c-5p mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCC - 20
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gma-miR160c-3p

• Accession: MIMAT0054168
• Description: Glycine max gma-miR160c-3p mature miRNA
• Sequence: 63 - CGUGCGAGGAGCCAUGCAUG - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153