Stem-loop gma-MIR160d

Accession

MI0017823

Description

Glycine max gma-MIR160d precursor miRNA

Literature search

21 open access papers mention gma-MIR160d
(61 sentences)

Sequence

448848 reads, 764.0 reads per million, 178 experiments

UGCCUGGCUCCCUGUAUGCCAUuuguagaccccauuacaaaggugauggccuuagcaaaugGCGUAUGAGGAGUCAUGCAUGcuguguuuu
(((.(((((((.((((((((((((((.((..(((((((....)))))))..)).)))))))))))))).))))))).)))...........

Structure

-----------   C       C              a  cc       a 
           UGC UGGCUCC UGUAUGCCAUuugu ga  ccauuac a
           ||| ||||||| |||||||||||||| ||  |||||||  
           ACG ACUGAGG GUAUGCGguaaacg uu  gguagug a
uuuugugucGU   U       A              a  cc       g 

Annotation confidence High

Genome context

chr13: 25235556-25235646 [-]

Mature gma-miR160d-5p

• Accession: MIMAT0020972
• Description: Glycine max gma-miR160d-5p mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCAU - 22
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gma-miR160d-3p

• Accession: MIMAT0054169
• Description: Glycine max gma-miR160d-3p mature miRNA
• Sequence: 62 - GCGUAUGAGGAGUCAUGCAUG - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153