Stem-loop gma-MIR1515a

Accession

MI0007228

Description

Glycine max gma-MIR1515a precursor miRNA

Literature search

11 open access papers mention gma-MIR1515a
(25 sentences)

Sequence

139320 reads, 457.0 reads per million, 175 experiments

uaaauguucaUCAUUUUGCGUGCAAUGAUCUGaaccauuuugauucccugcaccguuauuucguuguggcauaaucaaauuaagccauugauuuuauguuuguggaaaacguuUCUGAUCACUCACGCAAAAUGaugucaauuuu
.((((...((((((((((((((.(.(((((.((((...(((((((..(((((.((......)).)))))...))))))).....((((.(((.....))).)))).....))))..))))).)))))))))))))))...)))).

Structure

u    guu              C A     -U    ----------------------------cau       -cc     c  uu 
 aaau   caUCAUUUUGCGUG A UGAUC  Gaac                               uuugauu   cugca cg  a
 ||||   |||||||||||||| | |||||  ||||                               |||||||   ||||| ||   
 uuua   guaGUAAAACGCAC U ACUAG  Uuug                               aaacuaa   ggugu gc  u
u    acu              - C     UC    caaaagguguuuguauuuuaguuaccgaauu       uac     u  uu 

Annotation confidence Medium

Genome context

chr1: 49411416-49411560 [+]

Mature gma-miR1515a-5p

• Accession: MIMAT0007374
• Description: Glycine max gma-miR1515a-5p mature miRNA
• Sequence: 11 - UCAUUUUGCGUGCAAUGAUCUG - 32
• Evidence: experimental ; 454 [1]

Mature gma-miR1515a-3p

• Accession: MIMAT0054028
• Description: Glycine max gma-miR1515a-3p mature miRNA
• Sequence: 114 - UCUGAUCACUCACGCAAAAUG - 134
• Evidence: experimental ; unknown

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160