Stem-loop gma-MIR395d

Accession

MI0019788

Description

Glycine max gma-MIR395d precursor miRNA

Literature search

15 open access papers mention gma-MIR395d
(68 sentences)

Sequence

66412 reads, 261.0 reads per million, 162 experiments

gcugucucuuggAGUUCCUCUGAGCACUUCACGuacguguguggcuaguucuauucuguauuacccuuagauagaauagucuuaauuaagUGAAGUGUUUGGGGGAACUUUcgggaacaac
..(((.((((((((((((((((((((((((((..........(((((.((((((.(((.........))))))))))))))........))))))))))))))))))).))))))))))..

Structure

gc   c       -                   Guacgugugu     g      u   uau 
  ugu ucuuggA GUUCCUCUGAGCACUUCAC          ggcua uucuau cug   u
  ||| ||||||| |||||||||||||||||||          ||||| |||||| |||   a
  aca agggcUU CAAGGGGGUUUGUGAAGUg          cugau aagaua gau   c
ca   -       U                   --aauuaauu     -      -   ucc 

Annotation confidence High

Genome context

chr8: 41415505-41415625 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR395d

Mature gma-miR395d-5p

• Accession: MIMAT0054355
• Description: Glycine max gma-miR395d-5p mature miRNA
• Sequence: 13 - AGUUCCUCUGAGCACUUCACG - 33
• Evidence: experimental ; unknown

Mature gma-miR395d-3p

• Accession: MIMAT0023243
• Description: Glycine max gma-miR395d-3p mature miRNA
• Sequence: 91 - UGAAGUGUUUGGGGGAACUUU - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553