Stem-loop gma-MIR390a

Accession

MI0007214

Description

Glycine max gma-MIR390a precursor miRNA

Literature search

23 open access papers mention gma-MIR390a
(88 sentences)

Sequence

1005345 reads, 1485.0 reads per million, 178 experiments

agaaucuguaAAGCUCAGGAGGGAUAGCGCCAuggaugaucuucucuucacucuugaucuucucuugCGCUAUCCAUCCUGAGUUUCAuggcuucuaucuucaca
((((.((((.((((((((((.(((((((((...(((.((((..............)))).)))...))))))))).)))))))))).)))).)))).........

Structure

---------    u    a          G         CAu   u    uucucu 
         agaa cugu AAGCUCAGGA GGAUAGCGC   gga gauc      u
         |||| |||| |||||||||| |||||||||   ||| ||||       
         ucuu gguA UUUGAGUCCU CCUAUCGCg   ucu cuag      c
acacuucua    c    C          A         uuc   u    uucuca 

Annotation confidence High

Genome context

chr3: 6398854-6398958 [-]

Mature gma-miR390a-5p

• Accession: MIMAT0007359
• Description: Glycine max gma-miR390a-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCCA - 32
• Evidence: experimental ; 454 [1]

Mature gma-miR390a-3p

• Accession: MIMAT0007360
• Description: Glycine max gma-miR390a-3p mature miRNA
• Sequence: 68 - CGCUAUCCAUCCUGAGUUUCA - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160