Stem-loop gma-MIR169t

Accession

MI0019778

Description

Glycine max gma-MIR169t precursor miRNA

Literature search

24 open access papers mention gma-MIR169t
(102 sentences)

Sequence

1363 reads, 11.0 reads per million, 133 experiments

ucaugucuggUAGCCAAGGAUGGACUUGCCUAacuauuccauucuacgggacuuuauuuaauuaauuugucucauaugaagacccuuguuugguaaauUGGCAAGCUUCCUCGGCUAUUugcaugc
.(((((..(((((((.((((.((.((((((........(((..(...(((.((((((..................)))))).)))..)..)))......)))))))))))).))))))).))))).

Structure

u     cu       A    U  A      UAacuauu   uu uac   a      uuaauuaa 
 caugu  ggUAGCC AGGA GG CUUGCC        cca  c   ggg cuuuau        u
 |||||  ||||||| |||| || ||||||        |||  |   ||| ||||||         
 guacg  UUAUCGG UCCU UC GAACGG        ggu  g   ccc gaagua        u
c     -u       C    -  -      --Uuaaau   uu -uu   a      uacucugu 

Annotation confidence High

Genome context

chr5: 38544108-38544233 [+]

Mature gma-miR169t-5p

• Accession: MIMAT0023233
• Description: Glycine max gma-miR169t-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGGACUUGCCUA - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR169t-3p

• Accession: MIMAT0054345
• Description: Glycine max gma-miR169t-3p mature miRNA
• Sequence: 99 - UGGCAAGCUUCCUCGGCUAUU - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553