Stem-loop gma-MIR395i

Accession

MI0021715

Description

Glycine max gma-MIR395i precursor miRNA

Literature search

15 open access papers mention gma-MIR395i
(68 sentences)

Sequence

99161 reads, 256.0 reads per million, 169 experiments

cuguuggcugucuccugcAGUUCCUCUGAACGCUUCAUGugaggggcuagcaaguguauacguuauaauuuagccuucuucaAUGAAGUGUUUGGGGGAACUCuugggcucaacca
....(((.((..(((...((((((((((((((((((((.(((((((((((....((((.....))))..))))))..)))))))))))))))))))))))))...)))..)).)))

Structure

cugu   c  uc   ugc                    G     --      caag    u 
    ugg ug  ucc   AGUUCCUCUGAACGCUUCAU ugagg  ggcuag    ugua a
    ||| ||  |||   |||||||||||||||||||| |||||  ||||||    |||| c
    acc ac  ggg   UCAAGGGGGUUUGUGAAGUA acuuc  ccgauu    auau g
----   a  uc   uuC                    -     uu      --ua    u 

Annotation confidence High

Genome context

chr1: 4819957-4820072 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR395i

Mature gma-miR395i-5p

• Accession: MIMAT0054401
• Description: Glycine max gma-miR395i-5p mature miRNA
• Sequence: 19 - AGUUCCUCUGAACGCUUCAUG - 39
• Evidence: experimental ; unknown

Mature gma-miR395i-3p

• Accession: MIMAT0024921
• Description: Glycine max gma-miR395i-3p mature miRNA
• Sequence: 83 - AUGAAGUGUUUGGGGGAACUC - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169