Stem-loop gma-MIR167i

Accession

MI0017926

Description

Glycine max gma-MIR167i precursor miRNA

Literature search

28 open access papers mention gma-MIR167i
(186 sentences)

Sequence

500387 reads, 1214.0 reads per million, 160 experiments

caacuacuaggugaaacugccacaugaucugaucuuuccacggcaagugagggaaguUAAGAUCAUGCUGGCAGCUUCAacugguaguggugcaugaugguagacagauauugggaagaacaagaaccagaacaaguguucuaaaagguaa
.........(((....((.((.((..(((((..((((((.((.....)).)))))).....(((((((..((.(((.........))).)))))))))......)))))..)))).)).......)))(((((....))))).........

Structure

--------------caacuacua   ---gaaa  g  a  ug     aucuuuccacggcaagugagggaaguUAAG       UG  A   UCA 
                       ggu       cu cc ca  aucug                              AUCAUGC  GC GCU   a
                       |||       || || ||  |||||                              |||||||  || |||   c
                       cca       ga gg gu  uagac                              uaguacg  ug uga   u
aauggaaaaucuugugaacaaga   agaacaa  a  -  ua     ------------------------agaugg       --  g   ugg 

Annotation confidence Not enough data

Genome context

chr20: 39002038-39002188 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR167i

Mature gma-miR167i-5p

• Accession: MIMAT0021076
• Description: Glycine max gma-miR167i-5p mature miRNA
• Sequence: 58 - UAAGAUCAUGCUGGCAGCUUCA - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972