Stem-loop gma-MIR166n

Accession

MI0021690

Description

Glycine max gma-MIR166n precursor miRNA

Literature search

37 open access papers mention gma-MIR166n
(209 sentences)

Sequence

415547467 reads, 506403.0 reads per million, 178 experiments

agguugagaGGAAUGUUGUCUGGCUCGAGGUCauggaggaagaggagaguacugagaucagugaaaguuuccaauggaaauuuacccucuuaacacacacacagaaaaaaugauucUCGGACCAGGCUUCAUUCCCCccaccc
.(((.(.(.((((((..((((((.((((((((((.....((((((....(((((....))))).((((((((...))))))))..))))))..................)))).)))))).))))))..)))))).)).))).

Structure

a   u a a      UU      C      -    -------------ggagg      agaguacugagaucaguga        a 
 ggu g g GGAAUG  GUCUGG UCGAGG UCau                  aagagg                   aaguuucc  
 ||| | | ||||||  |||||| |||||| ||||                  ||||||                   |||||||| a
 cca c C CCUUAC  CGGACC GGCUcu agua                  uucucc                   uuuaaagg  
c   c - C      UU      A      u    aaaaagacacacacacaa      -----------------ca        u 

Annotation confidence High

Genome context

chr5: 38037266-38037408 [-]

Mature gma-miR166n-5p

• Accession: MIMAT0054378
• Description: Glycine max gma-miR166n-5p mature miRNA
• Sequence: 10 - GGAAUGUUGUCUGGCUCGAGGUC - 32
• Evidence: experimental ; unknown

Mature gma-miR166n-3p

• Accession: MIMAT0024896
• Description: Glycine max gma-miR166n-3p mature miRNA
• Sequence: 117 - UCGGACCAGGCUUCAUUCCCC - 137
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169