Stem-loop gma-MIR393a

Accession

MI0007216

Description

Glycine max gma-MIR393a precursor miRNA

Literature search

25 open access papers mention gma-MIR393a
(58 sentences)

Sequence

532060 reads, 1278.0 reads per million, 178 experiments

ggaggaggcaUCCAAAGGGAUCGCAUUGAUCccaaauccaagcuucaauauucuucucucuuucccacucaaaauauuaauuuuauuugggAUCAUGCUAUCCCUUUGGAUUucuccuuu
.(((((((.((((((((((((.((((.((((((((((..(((.((.((((((....................)))))))).))))))))))))))))).)))))))))))).))))))).

Structure

g       c            C    U          cc   c  c      cuucucucu 
 gaggagg aUCCAAAGGGAU GCAU GAUCccaaau  aag uu aauauu         u
 ||||||| |||||||||||| |||| ||||||||||  ||| || ||||||          
 uuccucu UAGGUUUCCCUA CGUA CUAggguuua  uuu aa uuauaa         u
u       U            U    -          --   u  -      aacucaccc 

Annotation confidence High

Genome context

chr11: 32101395-32101514 [+]

Mature gma-miR393a-5p

• Accession: MIMAT0007362
• Description: Glycine max gma-miR393a-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUC - 31
• Evidence: experimental ; 454 [1], Northern [1]

Mature gma-miR393a-3p

• Accession: MIMAT0054023
• Description: Glycine max gma-miR393a-3p mature miRNA
• Sequence: 92 - AUCAUGCUAUCCCUUUGGAUU - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160