Stem-loop gma-MIR156z

Accession

MI0021679

Description

Glycine max gma-MIR156z precursor miRNA

Literature search

39 open access papers mention gma-MIR156z
(155 sentences)

Sequence

72933 reads, 1821.0 reads per million, 169 experiments

uaaacccaaguugGAGCUCUCAGCACUCCAGUGUugaaggaagugaugguaaacccuagcugcuaauucaugguuaccuuugguuucacauaaggaagcaugugaagucaugggucugcaugaacuuggagaugggguugccuugaucuuuuaguAUUGGAGUGAAGGGAGCUCCUaauuaggccuu
.....((.(((((((((((((..((((((((((((((((((......(((((.(((((.((.((((((((((...((((.(((((((((((........))))))))))).))))...)))))).)))))).))))))))))....))))))))))))))))))..))))))))).)))).))....

Structure

uaaac  a    -         AG                  agugau     a     g  g    -      guu    u           aag 
     cc aguu gGAGCUCUC  CACUCCAGUGUugaagga      gguaa cccua cu cuaa uucaug   accu ugguuucacau   g
     || |||| |||||||||  ||||||||||||||||||      ||||| ||||| || |||| ||||||   |||| |||||||||||    
     gg uuaa CCUCGAGGG  GUGAGGUUAugauuuucu      ccguu ggggu ga gguu aaguac   uggg acugaagugua   a
-uucc  a    U         AA                  --aguu     -     a  -    c      guc    u           cga 

Annotation confidence High

Genome context

chr7: 5432656-5432842 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR156z

Mature gma-miR156z-5p

• Accession: MIMAT0054368
• Description: Glycine max gma-miR156z-5p mature miRNA
• Sequence: 14 - GAGCUCUCAGCACUCCAGUGU - 34
• Evidence: experimental ; unknown

Mature gma-miR156z-3p

• Accession: MIMAT0024885
• Description: Glycine max gma-miR156z-3p mature miRNA
• Sequence: 156 - AUUGGAGUGAAGGGAGCUCCU - 176
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169