Stem-loop gma-MIR166u

Accession

MI0021697

Description

Glycine max gma-MIR166u precursor miRNA

Literature search

37 open access papers mention gma-MIR166u
(220 sentences)

Sequence

415628704 reads, 502491.0 reads per million, 178 experiments

gagguugagaGGAAUGUUGUCUGGCUCGAGGucauggaggaggaggagaguacugagaugagugaaaguuuccaauggaaauuuacccucuuaacacaaaaaaaaauugauucUCGGACCAGGCUUCAUUCCCCacaccca
(.(((((.(.((((((..((((((.(((((((((((....((((((....((((......)))).((((((((...))))))))..))))))....)).........))).)))))).))))))..))))))))).)))).

Structure

- a   -  a a      UU      C      -   ---------  gagg      agaguacugagaugaguga        a 
 g ggu ug g GGAAUG  GUCUGG UCGAGG uca         ug    aggagg                   aaguuucc  
 | ||| || | ||||||  |||||| |||||| |||         ||    ||||||                   |||||||| a
 c cca aC C CCUUAC  CGGACC GGCUcu agu         ac    uucucc                   uuuaaagg  
a -   c  - -      UU      A      u   uaaaaaaaa  acaa      -----------------ca        u 

Annotation confidence High

Genome context

chr4: 33862799-33862939 [+]

Mature gma-miR166u-5p

• Accession: MIMAT0054385
• Description: Glycine max gma-miR166u-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUCUGGCUCGAGG - 31
• Evidence: experimental ; unknown

Mature gma-miR166u-3p

• Accession: MIMAT0024903
• Description: Glycine max gma-miR166u-3p mature miRNA
• Sequence: 114 - UCGGACCAGGCUUCAUUCCCC - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169