Stem-loop gma-MIR156aa

Accession

MI0021680

Description

Glycine max gma-MIR156aa precursor miRNA

Literature search

39 open access papers mention gma-MIR156aa
(155 sentences)

Sequence

48483 reads, 742.0 reads per million, 170 experiments

uaaacucaaguugGAGCUCUCUGCACUCCAGUGUUGaaggaggugaugguaaacccuagcugcuaauucaugguuaccuuuggcuucccauaaggaagcaugugaaagucauggguuuacaugaauauggagacgggguugccuugaucuuuugguAUUGGAGUGAAGGGAGCUCCGaauuaggccu
....((....((((((((((((.((((((((((....(((((((.(.(((((.((((..((.(..(((((((...((((.((((((..((((.(....).)))).)))))).))))...)))))))..).))..))))))))).).)))))))..)))))))))).))))))))))))...))....

Structure

uaaa  caag            G          UUGa       g u     a    ag  g ua       guu    u      cc    a g 
    cu    uugGAGCUCUCU CACUCCAGUG    aggaggu a gguaa cccu  cu c  auucaug   accu uggcuu  caua g a
    ||    |||||||||||| ||||||||||    ||||||| | ||||| ||||  || |  |||||||   |||| ||||||  |||| |  
    ga    aGCCUCGAGGGA GUGAGGUUAu    uuuucua u ccguu gggg  ga g  uaaguac   uggg acugaa  gugu c a
uccg  -uua            A          --gg       g u     -    ca  g ua       auu    u      -a    a g 

Annotation confidence High

Genome context

chr16: 2833375-2833561 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR156aa

Mature gma-miR156aa-5p

• Accession: MIMAT0054369
• Description: Glycine max gma-miR156aa-5p mature miRNA
• Sequence: 14 - GAGCUCUCUGCACUCCAGUGUUG - 36
• Evidence: experimental ; unknown

Mature gma-miR156aa-3p

• Accession: MIMAT0024886
• Description: Glycine max gma-miR156aa-3p mature miRNA
• Sequence: 157 - AUUGGAGUGAAGGGAGCUCCG - 177
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169