Stem-loop gma-MIR156q

Accession

MI0019748

Description

Glycine max gma-MIR156q precursor miRNA

Literature search

39 open access papers mention gma-MIR156q
(155 sentences)

Sequence

1617571 reads, 3067.0 reads per million, 178 experiments

uuuguggaggUGACAGAAGAGAGUGAGCACUuggcucuuuccuagcauggaucuaaguucacgccaaaagccguguGCUCUCUCUCUAUCUGUCACCaccuccuu
.....((.(((((((((((((((.((((((.(((((.(((....((.(((((....))))).)).)))))))).)))))).)))))).))))))))).)).....

Structure

uuugu  a         -      U      U     c   ccua  a     c 
     gg ggUGACAGA AGAGAG GAGCAC uggcu uuu    gc uggau u
     || ||||||||| |||||| |||||| ||||| |||    || |||||  
     cc CCACUGUCU UCUCUC CUCGug gccga aaa    cg acuug a
uuccu  a         A      U      u     -   ---c  c     a 

Annotation confidence High

Genome context

chr13: 22074983-22075087 [+]

Mature gma-miR156q-5p

• Accession: MIMAT0023203
• Description: Glycine max gma-miR156q-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCACU - 31
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR156q-3p

• Accession: MIMAT0054320
• Description: Glycine max gma-miR156q-3p mature miRNA
• Sequence: 77 - GCUCUCUCUCUAUCUGUCACC - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153