Stem-loop gma-MIR159c

Accession

MI0007207

Description

Glycine max gma-MIR159c precursor miRNA

Literature search

23 open access papers mention gma-MIR159c
(81 sentences)

Sequence

54209 reads, 707.0 reads per million, 162 experiments

acccaaguugGAGCUCUCUACACUCCAAGUCUGaaggaagugacgguagacccuugcugcuaauucaugguuaccuuuggauucagauaaggaagcaugugaaagucaugggucugcaugaauuugaagacggggcuaccuugaucuuuuaguAUUGGAGUGAAGGGAGCUCCGaauuaggccuu
.((.((.((((((((((((.((((((((..((((((((..(.(.(((((.((((..((...((((((((...((((.(((.((((.((........)).))))..))).))))...))))))))...))..))))))))).).)))))))))..)))))))).)))))))))))).)).))....

Structure

---a  c  g            A        GU        ag g c     a    ug  gcu        guu    u   -a    g  aag 
    cc aa uugGAGCUCUCU CACUCCAA  CUGaagga  u a gguag cccu  cu   aauucaug   accu ugg  uuca au   g
    || || |||||||||||| ||||||||  ||||||||  | | ||||| ||||  ||   ||||||||   |||| |||  |||| ||    
    gg uu aGCCUCGAGGGA GUGAGGUU  gauuuucu  a u ccauc gggg  ga   uuaaguac   uggg acu  aagu ua   a
uucc  a  a            A        Au        -- g u     -    ca  agu        guc    u   ga    g  cga 

Annotation confidence High

Genome context

chr16: 2830034-2830218 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR159c

Mature gma-miR159c-5p

• Accession: MIMAT0054016
• Description: Glycine max gma-miR159c-5p mature miRNA
• Sequence: 11 - GAGCUCUCUACACUCCAAGUCUG - 33
• Evidence: experimental ; unknown

Mature gma-miR159c-3p

• Accession: MIMAT0007352
• Description: Glycine max gma-miR159c-3p mature miRNA
• Sequence: 154 - AUUGGAGUGAAGGGAGCUCCG - 174
• Evidence: experimental ; 454 [1], Northern [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160