Stem-loop gma-MIR156t

Accession

MI0019770

Description

Glycine max gma-MIR156t precursor miRNA

Literature search

39 open access papers mention gma-MIR156t
(155 sentences)

Sequence

2730 reads, 14.0 reads per million, 148 experiments

cuuuuagagaUUGACAGAAGAAAGGGAGCACauacugcaauuauaugaacacauaccuuugccgugcguGCUCUCUUUUCUUGCUGUCAAUCucguauua
......(((((((((((((((((((((((((.(((.((((...((((....))))...)))).))).)))))).)))))))).)))))))))))......

Structure

cuuuua           -        -      a   u    uua    a 
      gagaUUGACAG AAGAAAGG GAGCAC uac gcaa   uaug a
      ||||||||||| |||||||| |||||| ||| ||||   ||||  
      cuCUAACUGUC UUCUUUUC CUCGug gug cguu   auac c
auuaug           G        U      c   c    ucc    a 

Annotation confidence High

Genome context

chr1: 56198440-56198539 [+]

Mature gma-miR156t-5p

• Accession: MIMAT0023225
• Description: Glycine max gma-miR156t-5p mature miRNA
• Sequence: 11 - UUGACAGAAGAAAGGGAGCAC - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR156t-3p

• Accession: MIMAT0054337
• Description: Glycine max gma-miR156t-3p mature miRNA
• Sequence: 70 - GCUCUCUUUUCUUGCUGUCAAUC - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553