Stem-loop gma-MIR1508c

Accession

MI0017855

Description

Glycine max gma-MIR1508c precursor miRNA

Literature search

8 open access papers mention gma-MIR1508c
(18 sentences)

Sequence

970508 reads, 2150.0 reads per million, 176 experiments

cuacucaACUGCUAUUUUCCUUUUUGAAccuuguuaccuugagcaucuugaucaauuguuUAGAAAGGGAAAUAGCAGUUGaguagugcu
(((((((((((((((((((((((((((((.(((...................)))..)))))))))))))))))))))))))))))....

Structure

----                             -c   uuaccuug 
    cuacucaACUGCUAUUUUCCUUUUUGAAc  uug        a
    |||||||||||||||||||||||||||||  |||        g
    gaugaGUUGACGAUAAAGGGAAAGAUuug  aac        c
ucgu                             uu   uaguucua 

Annotation confidence High

Genome context

chr9: 31140427-31140516 [+]

Mature gma-miR1508c-5p

• Accession: MIMAT0054195
• Description: Glycine max gma-miR1508c-5p mature miRNA
• Sequence: 8 - ACUGCUAUUUUCCUUUUUGAA - 28
• Evidence: experimental ; unknown

Mature gma-miR1508c-3p

• Accession: MIMAT0021007
• Description: Glycine max gma-miR1508c-3p mature miRNA
• Sequence: 61 - UAGAAAGGGAAAUAGCAGUUG - 81
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553