Stem-loop gma-MIR169r

Accession

MI0019762

Description

Glycine max gma-MIR169r precursor miRNA

Literature search

23 open access papers mention gma-MIR169r
(106 sentences)

Sequence

18923 reads, 91.0 reads per million, 163 experiments

agaguagauuUGAGCCAGGAUGGCUUGCCGGCauaugcuuaaaagcaaaaagauccccugcguggguauuaugcUGGUGGCCAUCCAGGCUCAUAuuuguucc
.((((((((.((((((.((((((((.(((((((((((((((...(((...........))).)))))).))))))))))))))))).)))))).)))))))).

Structure

a        u      A        U         -      aaa   aaaa 
 gaguagau UGAGCC GGAUGGCU GCCGGCaua ugcuua   gca    g
 |||||||| |||||| |||||||| ||||||||| ||||||   |||    a
 cuuguuuA ACUCGG CCUACCGG UGGUcguau augggu   cgu    u
c        U      A        -         u      --g   cccc 

Annotation confidence High

Genome context

chr17: 4587059-4587161 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR169r

Mature gma-miR169r-5p

• Accession: MIMAT0023217
• Description: Glycine max gma-miR169r-5p mature miRNA
• Sequence: 11 - UGAGCCAGGAUGGCUUGCCGGC - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR169r-3p

• Accession: MIMAT0054331
• Description: Glycine max gma-miR169r-3p mature miRNA
• Sequence: 75 - UGGUGGCCAUCCAGGCUCAUA - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553