Stem-loop gma-MIR393k

Accession

MI0021712

Description

Glycine max gma-MIR393k precursor miRNA

Literature search

21 open access papers mention gma-MIR393k
(49 sentences)

Sequence

1325281 reads, 1851.0 reads per million, 178 experiments

uguugguggagagUUCCAAAGGGAUCGCAUUGAUCUaauucuugaucuuccugcaugcauuugcuugcaguucugcuuuugagccauauuuuaccgguucacugacuuggaUCAUGCGAUCCCUUAGGAAUUcuccaucgcc
...((((((((((((((.((((((((((((.(((((((.((.........(((((.((....)).))))).........((((((..........))))))..)).))))))))))))))))))).))))))))))))))..

Structure

ugu              A            U       u  ------------------------uugaucuuc     u  a 
   ugguggagagUUCC AAGGGAUCGCAU GAUCUaa uc                                 cugca gc u
   |||||||||||||| |||||||||||| ||||||| ||                                 ||||| ||  
   gcuaccucUUAAGG UUCCCUAGCGUA CUagguu ag                                 gacgu cg u
-cc              A            -       c  ucacuuggccauuuuauaccgaguuuucgucuu     u  u 

Annotation confidence High

Genome context

chr20: 39779945-39780086 [-]

Mature gma-miR393k-5p

• Accession: MIMAT0024918
• Description: Glycine max gma-miR393k-5p mature miRNA
• Sequence: 14 - UUCCAAAGGGAUCGCAUUGAUCU - 36
• Evidence: experimental ; Illumina [1]

Mature gma-miR393k-3p

• Accession: MIMAT0054398
• Description: Glycine max gma-miR393k-3p mature miRNA
• Sequence: 112 - UCAUGCGAUCCCUUAGGAAUU - 132
• Evidence: experimental ; unknown

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169