Stem-loop gma-MIR828b

Accession

MI0019743

Description

Glycine max gma-MIR828b precursor miRNA

Literature search

8 open access papers mention gma-MIR828b
(21 sentences)

Sequence

2829 reads, 86.0 reads per million, 75 experiments

uuguaauguuUCUUGCUCAAAUGAGUAUUCCAaccacagucacauuuggcaugaaugugugccacuguccccaaaggcugAGAUGCUCAUUUGAGCAAGCAAuguuaaaa
...(((((((.((((((((((((((((((.((.((((((((((((((.....)))))))....))))).......)).)).)))))))))))))))))).)))))))...

Structure

uug       U                  C  a  -------     ----       g 
   uaauguu CUUGCUCAAAUGAGUAUU CA cc       acagu    cacauuu g
   ||||||| |||||||||||||||||| || ||       |||||    ||||||| c
   auuguAA GAACGAGUUUACUCGUAG gu gg       uguca    guguaag a
aaa       C                  A  c  aaacccc     ccgu       u 

Annotation confidence High

Genome context

chr12: 3219162-3219271 [+]

Mature gma-miR828b-5p

• Accession: MIMAT0023198
• Description: Glycine max gma-miR828b-5p mature miRNA
• Sequence: 11 - UCUUGCUCAAAUGAGUAUUCCA - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR828b-3p

• Accession: MIMAT0054315
• Description: Glycine max gma-miR828b-3p mature miRNA
• Sequence: 81 - AGAUGCUCAUUUGAGCAAGCAA - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553