Stem-loop gma-MIR166k

Accession

MI0019768

Description

Glycine max gma-MIR166k precursor miRNA

Literature search

38 open access papers mention gma-MIR166k
(216 sentences)

Sequence

204326193 reads, 246002.0 reads per million, 178 experiments

ggggguguuuggAAUGAGGUUUGAUCCAAGAUCaucacaucauauauauaucuucuucuucaauuucccuuuccuucuugauuuacuuaccuucauacauauauuauuauuuucaucacuucaugcaugggaugagacugaUCUCGGACCAGGCUUCAUUCCucacaccuaa
..((((((..(((((((((((((.(((.((((((............................................(((...........)))...............(((((((.((........))))))))).)))))).))).)))))))))))))..))))))..

Structure

gg      uu             A   A      ucacaucauauauauaucuucuucuucaauuucccuuuccuucuugauuuacuuaccuucauacauauauuauuau       a  uca 
  gggugu  ggAAUGAGGUUUG UCC AGAUCa                                                                            uuucauc cu   u
  ||||||  ||||||||||||| ||| ||||||                                                                            ||||||| ||    
  uccaca  CCUUACUUCGGAC AGG UCUagu                                                                            agaguag gg   g
aa      cu             C   C      ---------------------------------------------------------------------------c       -  uac 

Annotation confidence High

Genome context

chr19: 36827774-36827945 [-]

Mature gma-miR166k-5p

• Accession: MIMAT0054335
• Description: Glycine max gma-miR166k-5p mature miRNA
• Sequence: 13 - AAUGAGGUUUGAUCCAAGAUC - 33
• Evidence: experimental ; unknown

Mature gma-miR166k-3p

• Accession: MIMAT0023223
• Description: Glycine max gma-miR166k-3p mature miRNA
• Sequence: 142 - UCUCGGACCAGGCUUCAUUCC - 162
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553