Stem-loop gma-MIR160e

Accession

MI0017824

Description

Glycine max gma-MIR160e precursor miRNA

Literature search

21 open access papers mention gma-MIR160e
(60 sentences)

Sequence

459855 reads, 861.0 reads per million, 178 experiments

uacuuggcgUGCCUGGCUCCCUGUAUGCCAUuugcagagcccaucaggacagugauggccuuaacgaaugGCGUGCGAGGAGCCAUGCAU
........((((.(((((((.(((((((((((((..(((.((((((......)))))).)))..))))))))))))).))))))).))))

Structure

uacuuggc    C       C             ca   c      gg 
        gUGC UGGCUCC UGUAUGCCAUuug  gag ccauca  a
        |||| ||||||| |||||||||||||  ||| ||||||   
        UACG ACCGAGG GCGUGCGguaagc  uuc gguagu  c
--------    U       A             aa   c      ga 

Annotation confidence High

Genome context

chr3: 39255811-39255900 [-]

Mature gma-miR160e-5p

• Accession: MIMAT0020973
• Description: Glycine max gma-miR160e-5p mature miRNA
• Sequence: 10 - UGCCUGGCUCCCUGUAUGCCAU - 31
• Evidence: experimental ; 454 [1]

Mature gma-miR160e-3p

• Accession: MIMAT0054170
• Description: Glycine max gma-miR160e-3p mature miRNA
• Sequence: 71 - GCGUGCGAGGAGCCAUGCAU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506