Stem-loop gma-MIR828a

Accession

MI0019740

Description

Glycine max gma-MIR828a precursor miRNA

Literature search

8 open access papers mention gma-MIR828a
(21 sentences)

Sequence

2566 reads, 78.0 reads per million, 81 experiments

uuguaauguuUCUUGCUCAAAUGAGUAUUCCAaccacagucacauuuggcaugaauauugugugccacuguccucaaaggaugAGAUGCUCAUUUGACCAAGCAAuguuaaaa
...(((((((.((((.(((((((((((((.((.((......(((..(((((((.......))))))).))).......)).)).))))))))))))).)))).)))))))...

Structure

uug       U    C             C  a  -acaguc   uu       aa 
   uaauguu CUUG UCAAAUGAGUAUU CA cc       aca  uggcaug  u
   ||||||| |||| ||||||||||||| || ||       |||  |||||||  a
   auuguAA GAAC AGUUUACUCGUAG gu gg       ugu  accgugu  u
aaa       C    C             A  a  aaacucc   -c       gu 

Annotation confidence High

Genome context

chr11: 9052348-9052460 [+]

Mature gma-miR828a-5p

• Accession: MIMAT0023195
• Description: Glycine max gma-miR828a-5p mature miRNA
• Sequence: 11 - UCUUGCUCAAAUGAGUAUUCCA - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR828a-3p

• Accession: MIMAT0054312
• Description: Glycine max gma-miR828a-3p mature miRNA
• Sequence: 84 - AGAUGCUCAUUUGACCAAGCAA - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553