Stem-loop gma-MIR166o

Accession

MI0021691

Description

Glycine max gma-MIR166o precursor miRNA

Literature search

36 open access papers mention gma-MIR166o
(208 sentences)

Sequence

415546754 reads, 506382.0 reads per million, 178 experiments

auguugagaGGAAUGUUGUCUGGCUCGAGGUCaugauauggagauauauaugaaaguguuucaguuaaauuccaggguauauaaauuaauggaaauuaauuuauacccuaaaugauucUCGGACCAGGCUUCAUUCCCCccagcc
..((((.(.((((((..((((((.((((((((((.....((((...((..(((((...)))))..))..))))((((((((..(((((((....)))))))))))))))..)))).)))))).))))))..)))))).).)))).

Structure

au    a a      UU      C      -    gauauggagauauauaugaaaguguuucaguuaaauucc        ua       g 
  guug g GGAAUG  GUCUGG UCGAGG UCau                                       aggguaua  aauuaau g
  |||| | ||||||  |||||| |||||| ||||                                       ||||||||  |||||||  
  cgac C CCUUAC  CGGACC GGCUcu agua                                       ucccauau  uuaauua a
-c    c C      UU      A      u    -------------------------------------aa        --       a 

Annotation confidence High

Genome context

chr6: 13019417-13019561 [-]

Mature gma-miR166o-5p

• Accession: MIMAT0054379
• Description: Glycine max gma-miR166o-5p mature miRNA
• Sequence: 10 - GGAAUGUUGUCUGGCUCGAGGUC - 32
• Evidence: experimental ; unknown

Mature gma-miR166o-3p

• Accession: MIMAT0024897
• Description: Glycine max gma-miR166o-3p mature miRNA
• Sequence: 119 - UCGGACCAGGCUUCAUUCCCC - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169