Stem-loop gma-MIR390c

Accession

MI0017845

Description

Glycine max gma-MIR390c precursor miRNA

Literature search

20 open access papers mention gma-MIR390c
(74 sentences)

Sequence

1004932 reads, 1473.0 reads per million, 178 experiments

uguaAAGCUCAGGAGGGAUAGCGCCAuggaugaucucuucuccacucuugaucuucucuugCGCUAUCCAUCCUGAGUUUCAuggcuucu
....((((((((((.(((((((((...(((.((((..............)))).)))...))))))))).))))))))))..........

Structure

------ugua          G         CAu   u    ucuucu 
          AAGCUCAGGA GGAUAGCGC   gga gauc      c
          |||||||||| |||||||||   ||| ||||       
          UUUGAGUCCU CCUAUCGCg   ucu cuag      c
ucuucgguAC          A         uuc   u    uucuca 

Annotation confidence High

Genome context

chr1: 43181160-43181249 [+]

Mature gma-miR390c-5p

• Accession: MIMAT0054189
• Description: Glycine max gma-miR390c-5p mature miRNA
• Sequence: 5 - AAGCUCAGGAGGGAUAGCGCCA - 26
• Evidence: experimental ; unknown

Mature gma-miR390c-3p

• Accession: MIMAT0020995
• Description: Glycine max gma-miR390c-3p mature miRNA
• Sequence: 62 - CGCUAUCCAUCCUGAGUUUCA - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506