Stem-loop gma-MIR167d

Accession

MI0010571

Description

Glycine max gma-MIR167d precursor miRNA

Literature search

28 open access papers mention gma-MIR167d
(189 sentences)

Sequence

6066565 reads, 13303.0 reads per million, 177 experiments

aagggucacaagggaaaaagUGAAGCUGCCAGCAUGAUCUAgcuuugguuagugggagccagagagugcuaacccucacuagGUCAUGCUGUGCUAGCCUCACUccuuccuauuuggagac
....(((.((((((((..(((((.((((((((((((((((((....((((((((............))))))))....))))))))))))).)).))).)))))..)))))..)))..)))

Structure

aagg   -a   --     aa     A   -  -             cuuu        ggagc 
    guc  caa  gggaa  agUGA GCU GC CAGCAUGAUCUAg    gguuagug     c
    |||  |||  |||||  ||||| ||| || |||||||||||||    ||||||||      
    cag  guu  uccuu  UCACU CGA CG GUCGUACUGgauc    ccaaucgu     a
----   ag   ua     cc     C   U  U             acuc        gagag 

Annotation confidence High

Genome context

chr10: 2648276-2648396 [+]

Mature gma-miR167d-5p

• Accession: MIMAT0010078
• Description: Glycine max gma-miR167d-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUA - 41
• Evidence: experimental ; cloned [1], 454 [2], SOLiD [3]

Mature gma-miR167d-3p

• Accession: MIMAT0054049
• Description: Glycine max gma-miR167d-3p mature miRNA
• Sequence: 83 - GUCAUGCUGUGCUAGCCUCACU - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


3. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972