Stem-loop gma-MIR166t

Accession

MI0021696

Description

Glycine max gma-MIR166t precursor miRNA

Literature search

36 open access papers mention gma-MIR166t
(207 sentences)

Sequence

515381873 reads, 596101.0 reads per million, 178 experiments

aggguguggGGAAUGUCGCCUUGGCUCGAGAgagauauaugcaugauguguccaugcauucaccaaugaaucaaaugauauuauaucaguuugaauugugaauguuuucUCGGACCAGGCUUCAUUCCCCUcacuc
.(((((.((((((((..((((.((.(((((((((((((((.....)))))))...((((((((.(((...((((((((((...))))).)))))))))))))))))))))))).))))))..)))))))).)))))

Structure

a     u        UC    U  C        gauauaugcaugauguguccau        c   gaa     -     u 
 gggug ggGGAAUG  GCCU GG UCGAGAga                      gcauucac aau   ucaaa ugaua  
 ||||| ||||||||  |||| || ||||||||                      |||||||| |||   ||||| ||||| u
 cucac CCCCUUAC  CGGA CC GGCUcuuu                      uguaagug uua   aguuu acuau  
-     U        UU    -  A        ----------------------        -   ---     g     a 

Annotation confidence High

Genome context

chr9: 39698809-39698944 [-]

Mature gma-miR166t-5p

• Accession: MIMAT0054384
• Description: Glycine max gma-miR166t-5p mature miRNA
• Sequence: 10 - GGAAUGUCGCCUUGGCUCGAGA - 31
• Evidence: experimental ; unknown

Mature gma-miR166t-3p

• Accession: MIMAT0024902
• Description: Glycine max gma-miR166t-3p mature miRNA
• Sequence: 110 - UCGGACCAGGCUUCAUUCCCCU - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169