Stem-loop gma-MIR166l

Accession

MI0019780

Description

Glycine max gma-MIR166l precursor miRNA

Literature search

36 open access papers mention gma-MIR166l
(210 sentences)

Sequence

4777064 reads, 50766.0 reads per million, 178 experiments

uuuccuugcaaaggugagguugagaGGAAUGUUGUCUGGCUCGAGGucauggaggaggagaguacucagaugagugaaaguuuccaauggaaauuuacccucuuaacaccaaaaaaaaaaaaaaaauugauUCUGGGACCAGGCUUCAUUUCccccauccaacuuuuguuuuuuauucc
.......((((((((..((.((.(.((((((..((((((((((.((((((((((((((....(((((....))))).((((((((...))))))))..))))))....)))................))))).)))).))))))..)))))).).)).)).))))))))..........

Structure

---uuuccuu        ga  u  a a      UU      -    A     ----------------   ----      agaguacucagaugaguga        a 
          gcaaaggu  gg ug g GGAAUG  GUCUGG CUCG GGuca                ugg    aggagg                   aaguuucc  
          ||||||||  || || | ||||||  |||||| |||| |||||                |||    ||||||                   |||||||| a
          uguuuuca  cc ac c CUUUAC  CGGACC GGGU Uuagu                acc    uucucc                   uuuaaagg  
ccuuauuuuu        -a  u  c c      UU      A    C     uaaaaaaaaaaaaaaa   acaa      -----------------ca        u 

Annotation confidence High

Genome context

chr6: 45680685-45680863 [-]

Mature gma-miR166l-5p

• Accession: MIMAT0023235
• Description: Glycine max gma-miR166l-5p mature miRNA
• Sequence: 26 - GGAAUGUUGUCUGGCUCGAGG - 46
• Evidence: experimental ; Illumina [1]

Mature gma-miR166l-3p

• Accession: MIMAT0054347
• Description: Glycine max gma-miR166l-3p mature miRNA
• Sequence: 132 - UCUGGGACCAGGCUUCAUUUC - 152
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553