Stem-loop gma-MIR4416b

Accession

MI0019722

Description

Glycine max gma-MIR4416b precursor miRNA

Literature search

4 open access papers mention gma-MIR4416b
(6 sentences)

Sequence

31556 reads, 94.0 reads per million, 171 experiments

aucuuugaucUGGGUGAGAGAAACGCGUAUCGaugagauucagggcuuacuaguucacacaguugcauccacacaccaauuguuuuaacaauuuggagugaguguguuuugaucgAUACGGGUCCUCUCACCUAGACUagaguu
..(((((.((((((((((((..((.(((((((((.(((....(((((....)))))(((((.((((.((((......((((((....)))))))))))))).)))))))).))))))))).)).)))))))))))).)))))..

Structure

au     a            AA  G         g   uucagggcuuacuaguuc     g    a    cacacc      u 
  cuuug ucUGGGUGAGAG  AC CGUAUCGau aga                  acaca uugc ucca      aauugu u
  ||||| ||||||||||||  || ||||||||| |||                  ||||| |||| ||||      ||||||  
  gagaU AGAUCCACUCUC  UG GCAUAgcua uuu                  ugugu agug aggu      uuaaca u
uu     C            -C  G         g   ------------------     g    -    ------      a 

Annotation confidence High

Genome context

chr3: 36067834-36067977 [-]

Mature gma-miR4416b-5p

• Accession: MIMAT0023177
• Description: Glycine max gma-miR4416b-5p mature miRNA
• Sequence: 11 - UGGGUGAGAGAAACGCGUAUCG - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR4416b-3p

• Accession: MIMAT0054297
• Description: Glycine max gma-miR4416b-3p mature miRNA
• Sequence: 116 - AUACGGGUCCUCUCACCUAGACU - 138
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553