Stem-loop gma-MIR390e

Accession

MI0021701

Description

Glycine max gma-MIR390e precursor miRNA

Literature search

19 open access papers mention gma-MIR390e
(76 sentences)

Sequence

886778 reads, 1208.0 reads per million, 175 experiments

gaagaauuuguaAAGCUCAGGAGGGAUAGCGCCauggaaggucuuucuacuaauuugcucuaucaugggugcuuugguuucgaucgaucuucucuagCGCUACCCAUCCUGAGUUUCAugguuucuu
.(((((.((((.(((((((((((((.((((((...((((((((..((.(((((..(((((......)))))..)))))...))..))))))))...))))))))).)))))))))).)))).)))))

Structure

g     u    a          -   A      Cau        uu  --u     uu     ua 
 aagaa uugu AAGCUCAGGA GGG UAGCGC   ggaagguc  uc   acuaa  ugcuc  u
 ||||| |||| |||||||||| ||| ||||||   ||||||||  ||   |||||  |||||   
 uucuu gguA UUUGAGUCCU CCC AUCGCg   ucuucuag  ag   ugguu  guggg  c
-     u    C          A   -      auc        cu  cuu     uc     ua 

Annotation confidence High

Genome context

chr18: 49001211-49001337 [+]

Mature gma-miR390e-5p

• Accession: MIMAT0024907
• Description: Glycine max gma-miR390e-5p mature miRNA
• Sequence: 13 - AAGCUCAGGAGGGAUAGCGCC - 33
• Evidence: experimental ; Illumina [1]

Mature gma-miR390e-3p

• Accession: MIMAT0054388
• Description: Glycine max gma-miR390e-3p mature miRNA
• Sequence: 98 - CGCUACCCAUCCUGAGUUUCA - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169