Stem-loop gma-MIR156ab

Accession

MI0021681

Description

Glycine max gma-MIR156ab precursor miRNA

Literature search

39 open access papers mention gma-MIR156ab
(155 sentences)

Sequence

291 reads, 21.0 reads per million, 84 experiments

ucaaacacaagcuggagcucucucacuucaauuaugagcggauaugaugggaaaccucugcugcuaauucguggauaccucugguuccguaacaacauacguucgaagucaaggguuugcaugaauugggagaugaaguuauuaccuugaucuuuuuguAUUUAAGUGAUGGGAGCUCCGguggguau
......((..((((((((((((((((((.((.((((((.((((.....((..(((.((..((.((((((((((.(.((((.((((((((((......))))...))).))).)))).).)))))))))).))..)).)))....))...)))).)))))).)))))))).))))))))))))..))..

Structure

ucaaac  aa            -      c  u      c    augau  --ga   c  ug  g          g u    c   -   ---    ac 
      ac  gcuggagcucuc ucacuu aa uaugag ggau     gg    aac uc  cu cuaauucgug a accu ugg uuc   cgua  a
      ||  |||||||||||| |||||| || |||||| ||||     ||    ||| ||  || |||||||||| | |||| ||| |||   ||||   
      ug  ugGCCUCGAGGG AGUGAA UU Auguuu ucua     cc    uug ag  ga gguuaaguac u uggg acu aag   gcau  a
----ua  gg            U      -  U      u    --guu  auua   a  ua  g          g u    a   g   cuu    ac 

Annotation confidence Not enough data

Genome context

chr7: 5415191-5415378 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR156ab

Mature gma-miR156ab-3p

• Accession: MIMAT0024887
• Description: Glycine max gma-miR156ab-3p mature miRNA
• Sequence: 160 - AUUUAAGUGAUGGGAGCUCCG - 180
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169