Stem-loop gma-MIR167f

Accession

MI0010726

Description

Glycine max gma-MIR167f precursor miRNA

Literature search

28 open access papers mention gma-MIR167f
(184 sentences)

Sequence

6434670 reads, 16934.0 reads per million, 176 experiments

ucaugcaccacuaccaguUGAAGCUGCCAGCAUGAUCUUAacuucccucacuugcuguggaaagaucAGAUCAUGUGGCAGUUUCACCUaguaguuguuggccgcauga
((((((.(((((((.((.(((((((((((.((((((((...(((.((.((.....)).)).)))...))))))))))))))))))).)).)))))....))..))))))

Structure

      -a  ----     c  u           G        UAa   c  u  c 
ucaugc  cc    acuac ag UGAAGCUGCCA CAUGAUCU   cuu cc ca u
||||||  ||    ||||| || ||||||||||| ||||||||   ||| || || u
aguacg  gg    ugaug UC ACUUUGACGGU GUACUAGA   gaa gg gu g
      cc  uugu     a  C           -        cua   a  u  c 

Annotation confidence High

Genome context

chr10: 47144841-47144949 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR167f

Mature gma-miR167f-5p

• Accession: MIMAT0011197
• Description: Glycine max gma-miR167f-5p mature miRNA
• Sequence: 19 - UGAAGCUGCCAGCAUGAUCUUA - 40
• Evidence: experimental ; cloned [1], Northern [1]

Mature gma-miR167f-3p

• Accession: MIMAT0054058
• Description: Glycine max gma-miR167f-3p mature miRNA
• Sequence: 68 - AGAUCAUGUGGCAGUUUCACCU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803