Stem-loop gma-MIR160b

Accession

MI0017821

Description

Glycine max gma-MIR160b precursor miRNA

Literature search

22 open access papers mention gma-MIR160b
(61 sentences)

Sequence

474360 reads, 1037.0 reads per million, 178 experiments

auguguaugUGCCUGGCUCCCUGUAUGCCAUuugcauaguucauugagcaucaaugaucuuugugaaugGCGUAUGAGGAGCCAAGCAUA
.......(((((.(((((((.(((((((((((((((.((.(((((((...))))))).)).))))))))))))))).))))))).)))))

Structure

augugua     C       C               u  u       g 
       ugUGC UGGCUCC UGUAUGCCAUuugca ag ucauuga  
       ||||| ||||||| ||||||||||||||| || ||||||| c
       AUACG ACCGAGG GUAUGCGguaagugu uc aguaacu  
-------     A       A               u  u       a 

Annotation confidence High

Genome context

chr20: 41668766-41668855 [+]

Mature gma-miR160b-5p

• Accession: MIMAT0020970
• Description: Glycine max gma-miR160b-5p mature miRNA
• Sequence: 10 - UGCCUGGCUCCCUGUAUGCCAU - 31
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gma-miR160b-3p

• Accession: MIMAT0054167
• Description: Glycine max gma-miR160b-3p mature miRNA
• Sequence: 70 - GCGUAUGAGGAGCCAAGCAUA - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153