miRBase entry: gma-MIR156ab

Stem-loop gma-MIR156ab


Accession
MI0021681
Description
Glycine max gma-MIR156ab precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
40 open access papers mention gma-MIR156ab
(162 sentences)

Sequence

ucaaacacaagcuggagcucucucacuucaauuaugagcggauaugaugggaaaccucugcugcuaauucguggauaccucugguuccguaacaacauacguucgaagucaaggguuugcaugaauugggagaugaaguuauuaccuugaucuuuuuguAUUUAAGUGAUGGGAGCUCCGguggguau
......((..((((((((((((((((((.((.((((((.((((.....((..(((.((..((.((((((((((.(.((((.((((((((((......))))...))).))).)))).).)))))))))).))..)).)))....))...)))).)))))).)))))))).))))))))))))..))..

Structure
ucaaac  aa            -      c  u      c    augau  --ga   c  ug  g          g u    c   -   ---    ac 
      ac  gcuggagcucuc ucacuu aa uaugag ggau     gg    aac uc  cu cuaauucgug a accu ugg uuc   cgua  a
      ||  |||||||||||| |||||| || |||||| ||||     ||    ||| ||  || |||||||||| | |||| ||| |||   ||||   
      ug  ugGCCUCGAGGG AGUGAA UU Auguuu ucua     cc    uug ag  ga gguuaaguac u uggg acu aag   gcau  a
----ua  gg            U      -  U      u    --guu  auua   a  ua  g          g u    a   g   cuu    ac 


Annotation confidence Not enough data
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Genome context
chr7: 5415191-5415378 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR156ab
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR156ab

Accession MIMAT0024887
Description Glycine max gma-miR156ab mature miRNA
Sequence 160 - AUUUAAGUGAUGGGAGCUCCG - 180
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22559273
    Genome organization and characteristics of soybean microRNAs
    Turner M, Yu O, Subramanian S
    BMC Genomics (2012) 13:169