miRBase entry: gma-MIR393i

Stem-loop gma-MIR393i


Accession
MI0021710
Description
Glycine max gma-MIR393i precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
21 open access papers mention gma-MIR393i
(52 sentences)

Sequence

guugguggauagUUCCAAAGGGAUCGCAUUGAUCuaauucuuuaucuuccugcauguauuuacuugcagcucugguuuuggaccuuuuuaccgguucacugacuuggaucaugcgaucccuuaggaauuuuccaucgc
..(((((((.((((((.((((((((((((.((((((.............(((((.((....)).)))))....((((.((((((........))))))..)))))))))))))))))))))).)))))).))))))).

Structure
gu       u      A            U      auucuuuaucuuccugcauguauuuacuugcagcucu    -u      uuu 
  uggugga agUUCC AAGGGAUCGCAU GAUCua                                     gguu  uggacc   u
  ||||||| |||||| |||||||||||| ||||||                                     ||||  ||||||    
  gcuaccu uuaagg uucccuagcgua cuaggu                                     ucag  acuugg   u
-c       u      a            -      -------------------------------------    uc      cca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 46430313-46430450 [+]

Database links

Mature gma-miR393i

Accession MIMAT0024916
Description Glycine max gma-miR393i mature miRNA
Sequence 13 - UUCCAAAGGGAUCGCAUUGAUC - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22559273
    Genome organization and characteristics of soybean microRNAs
    Turner M, Yu O, Subramanian S
    BMC Genomics (2012) 13:169