miRBase entry: gma-MIR393k

Stem-loop gma-MIR393k


Accession
MI0021712
Description
Glycine max gma-MIR393k precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
21 open access papers mention gma-MIR393k
(50 sentences)

Sequence

uguugguggagagUUCCAAAGGGAUCGCAUUGAUCuaauucuugaucuuccugcaugcauuugcuugcaguucugcuuuugagccauauuuuaccgguucacugacuuggaucaugcgaucccuuaggaauucuccaucgcc
...((((((((((((((.((((((((((((.(((((((.((.........(((((.((....)).))))).........((((((..........))))))..)).))))))))))))))))))).))))))))))))))..

Structure
ugu              A            U       u  ------------------------uugaucuuc     u  a 
   ugguggagagUUCC AAGGGAUCGCAU GAUCuaa uc                                 cugca gc u
   |||||||||||||| |||||||||||| ||||||| ||                                 ||||| ||  
   gcuaccucuuaagg uucccuagcgua cuagguu ag                                 gacgu cg u
-cc              a            -       c  ucacuuggccauuuuauaccgaguuuucgucuu     u  u 


Annotation confidence Not enough data
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Genome context
chr20: 39779945-39780086 [-]

Database links

Mature gma-miR393k

Accession MIMAT0024918
Description Glycine max gma-miR393k mature miRNA
Sequence 14 - UUCCAAAGGGAUCGCAUUGAUC - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22559273
    Genome organization and characteristics of soybean microRNAs
    Turner M, Yu O, Subramanian S
    BMC Genomics (2012) 13:169