miRBase entry: sma-mir-2a

Stem-loop sma-mir-2a


Accession
MI0021820
Description
Schistosoma mansoni sma-mir-2a precursor miRNA
Gene family
MIPF0001838; mir-2_2

Literature search
5 open access papers mention sma-mir-2a
(15 sentences)

Sequence

accucuugcgccgCAGUCAAUAUUGGCUGAAGGCAuugcuuuauugUCACAGCCAGUAUUGAUGAACGguguaaaagg
.(((.((((((((..((((((((((((((..((((.........)))).))))))))))))))...)))))))).)))

Structure
a   c        -CA              AA    uug 
 ccu uugcgccg   GUCAAUAUUGGCUG  GGCA   c
 ||| ||||||||   ||||||||||||||  ||||   u
 gga aaugugGC   UAGUUAUGACCGAC  CUgu   u
-   a        AAG              -A    uau 


Annotation confidence Not enough data
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Genome context
Chr_W: 22875749-22875826 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sma-mir-2a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-2a-5p

Accession MIMAT0025029
Description Schistosoma mansoni sma-miR-2a-5p mature miRNA
Sequence 14 - CAGUCAAUAUUGGCUGAAGGCA - 35
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-miR-2a-3p

Accession MIMAT0025030
Description Schistosoma mansoni sma-miR-2a-3p mature miRNA
Sequence 47 - UCACAGCCAGUAUUGAUGAACG - 68
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 21640815
    Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
    "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
    "Genomics (2011) 98:96-111

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402